PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G195000.1
Common NameB456_009G195000, LOC105769812
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 425aa    MW: 46133.3 Da    PI: 9.4827
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G195000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047179200323
                         ETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                         C+ Cg++F+  ++L+ H+ + H
  Gorai.009G195000.1 179 CSQCGEVFPKIESLELHQAVrH 200
                         ******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.933177205IPR007087Zinc finger, C2H2
PROSITE patternPS000280179200IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-24202421No hitNo description
Gene3DG3DSA:3.90.228.102.7E-15204421IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MALLTFLPEP AAEPMKVEQP SKRGRNPVKK QKEKQPSSWD QIKNLLSCKQ IEGSKVHDPS  60
KNNQLPHHHG YSKLGSSCKS ICSFNDVVHG NTRVVHRADN SPESSTVGQE TGLLRRKAGN  120
SSSTRSLSGS TRTNNSSTTY TTSSSSRAMQ FRKLSGCYEC RMIVDPSRYP SSRTTISACS  180
QCGEVFPKIE SLELHQAVRH AVSELGPDDS GRNIVEIIFK SSWLKKDNPI CKIERILKVH  240
NTQRTIQRFE DCRDAVKTRA LNSTRKNPRC AADGNELLRF HCTTLSCSLG ARGSSSLCGS  300
IPGCGVCTII KQGFQKKGGG AAAAAEFKGV CTTASSGRAH DSLKCTDGRR AMLVCRVIAG  360
RVKRVTEDAP PFEEDNSGVV AAATGSYDSL AAYAGVYSNL EELVVFNPRA ILPCFVVIYK  420
AHES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446153.10.0PREDICTED: uncharacterized protein LOC105769812
TrEMBLA0A0D2TMP90.0A0A0D2TMP9_G
STRINGPOPTR_0005s25950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.10.0C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]